The folks here have done a wonderful job in making these tutorials, do check it out in your free (chuckle) time
ENCODE Foundations (first tutorial, with background information):http://openhelix.com/ENCODE
New ENCODE II tutorial suite, with updated details: http://openhelix.com/ENCODE2
You can view the movie, download the slides + handouts + exercises. These were sponsored by the UCSC DCC team. You can use the materials to train yourself or your team, or download them for use in classrooms/seminars/workshops.