Other memorable quotes
"Now you're telling me Martians with long stretches of repeats can't be sequenced?"
I wonder if there will be a video retort from the other camp.
Showing posts with label MiSeq. Show all posts
Showing posts with label MiSeq. Show all posts
Tuesday, 27 November 2012
I want to seq every martian for $1000 ..lol
This is pretty funny poke at the Ion Torrent (&Proton) vs MiSeq debate!
Other memorable quotes
I wonder if there will be a video retort from the other camp.
Other memorable quotes
I wonder if there will be a video retort from the other camp.
Tuesday, 15 May 2012
NATURE BIOTECHNOLOGY | Performance comparison of benchtop high-throughput sequencing platforms
NATURE BIOTECHNOLOGY | RESEARCH | ANALYSIS
Performance comparison of benchtop high-throughput sequencing platforms
- Nature Biotechnology
- 30,
- 434–439
- (2012)
- doi:10.1038/nbt.2198
Friday, 17 February 2012
a tour of various bioinformatics functions in Avadis NGS
Not affliated with Avadis but this might be useful for you
We are hosting an online seminar series on the alignment and analysis of genomics data from “benchtop” sequencers, i.e. MiSeq and Ion Torrent. Our webinar panelists will give a tour of various bioinformatics functions in Avadis NGS that will enable researchers and clinicians to derive biological insights from their benchtop sequencing data.
Seminar #1: MiSeq Data Analysis
Avadis NGS 1.3 provides special support for analyzing data generated by MiSeq™ sequencers. In this webinar, we will describe how the data in a MiSeq generated “run folder” is automatically loaded into the Avadis NGS software during small RNA alignment and DNA variant analysis. This is especially helpful in processing the large number of files generated when the TruSeq™ Amplicon Kits are used. We will describe how to use the Quality Control steps in Avadis NGS to check if the amplicons have sufficient coverage in all the samples. Regions with unexpected coverages can easily be identified using the new region list clustering feature. Webinar attendees will learn how to use the “Find Significant SNPs” feature to quickly identify high-confidence SNPs present in a majority of the samples, rare variants, etc.
Seminar #2: Ion Torrent Data Analysis
Avadis NGS 1.3 includes a new aligner – COBWeb – that is fully capable of aligning the long, variable-length reads generated by Ion Torrent sequencers. In this webinar, we will show the pre-alignment QC plots and illustrate how they can be used to set appropriate alignment parameters for aligning Ion Torrent reads. For users who choose to import the BAM format files generated by the Ion Torrent Server, we will describe the steps needed for importing amplicon sequencing data into Avadis NGS. Users of the Ion AmpliSeq™ Cancer Panel will learn how to easily import the targeted mutation list and verify the genotype call at the mutation sites. We will also show the new “Find Significant SNPs” feature which helps quickly identify high-confidence SNPs present in a majority of the samples, rare variants, etc.
Free registration - http://www.avadis-ngs.com/webinar
We are hosting an online seminar series on the alignment and analysis of genomics data from “benchtop” sequencers, i.e. MiSeq and Ion Torrent. Our webinar panelists will give a tour of various bioinformatics functions in Avadis NGS that will enable researchers and clinicians to derive biological insights from their benchtop sequencing data.
Seminar #1: MiSeq Data Analysis
Avadis NGS 1.3 provides special support for analyzing data generated by MiSeq™ sequencers. In this webinar, we will describe how the data in a MiSeq generated “run folder” is automatically loaded into the Avadis NGS software during small RNA alignment and DNA variant analysis. This is especially helpful in processing the large number of files generated when the TruSeq™ Amplicon Kits are used. We will describe how to use the Quality Control steps in Avadis NGS to check if the amplicons have sufficient coverage in all the samples. Regions with unexpected coverages can easily be identified using the new region list clustering feature. Webinar attendees will learn how to use the “Find Significant SNPs” feature to quickly identify high-confidence SNPs present in a majority of the samples, rare variants, etc.
Seminar #2: Ion Torrent Data Analysis
Avadis NGS 1.3 includes a new aligner – COBWeb – that is fully capable of aligning the long, variable-length reads generated by Ion Torrent sequencers. In this webinar, we will show the pre-alignment QC plots and illustrate how they can be used to set appropriate alignment parameters for aligning Ion Torrent reads. For users who choose to import the BAM format files generated by the Ion Torrent Server, we will describe the steps needed for importing amplicon sequencing data into Avadis NGS. Users of the Ion AmpliSeq™ Cancer Panel will learn how to easily import the targeted mutation list and verify the genotype call at the mutation sites. We will also show the new “Find Significant SNPs” feature which helps quickly identify high-confidence SNPs present in a majority of the samples, rare variants, etc.
Free registration - http://www.avadis-ngs.com/webinar
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