Thursday, 27 September 2012

using gzipped geno files for snptest

seems like using gzipped input files doesn't affect the analysis timings of snptest
will do this with binary geno (bgen) files and update

$ grep 'User' 6template-snptest.sh.log.gz.1 6template-snptest.sh.log
6template-snptest.sh.log.gz.1: User time (seconds): 669.87
6template-snptest.sh.log: User time (seconds): 662.10

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Datanami, Woe be me