Tuesday, 11 September 2012

[pub]: [Samtools-help] Picard release 1.77

From: Alec Wysoker

Picard release 1.77
10 September 2012

- CleanSam.java: Add additional clean-up: set MAPQ to 0 if a read is

- MergeBamAlignment.java: Add option ALIGNER_PROPER_PAIR_FLAGS to
MergeBamAlignment to tell it to keep the aligner's notion of proper pair
flag rather than overwriting it with MergeBamAlignment's notion.



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