Friday, 20 July 2012

Myrna 1.2.0 released

Version 1.2.0 - July 19, 2012
   * Added support for Hadoop version 0.20.205.
   * Dropped support for Hadoop versions prior to 0.20.
   * Updated default Hadoop version for EMR jobs to 0.20.205.
   * Updated Bowtie version used to 0.12.8.
   * Updated R version used to 2.14.2.
   * Updated jar files to use Ensembl v67 (used to be v61).  In the
     process, fixed an issue whereby $MYRNA_HOME/reftools scripts
     would die due to unexpected new format of Ensembl database schema.
   * Fixed issues with streaming jar version parsing
   * Fixed documentation bugs regarding --sra-toolkit option, which is
     superseded by the --fastq-dump option.
   * Removed some diagnostic counters because Hadoop began to enforce
     an upper limit on the number of counters allowed per job.  For
     instance, per-label summary statistics are no longer printed in
     the Normalize step.


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