Tuesday, 31 January 2012

[Samtools-help] Picard release 1.61

Picard release 1.61
30 January 2012

- PicardException used to extend SAMException, which extends RuntimeException.  Now PicardException extends RuntimeException directly.  If you have code that catches SAMException, you may want to add a catch clause for PicardException if you use the net.sf.picard classes.  If you only use classes in net.sf.samtools, you should never see PicardException thrown.

- IlluminaDataProviderFactory.java: Ensure position data type is in set of data types in ctors rather than in makeDataProvider(), in order to avoid ConcurrentModificationException.


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