How to run SGE jobs (comparison to PBS scripts)

if you didn't know already the Torrent Server uses SGE, for those of us who are more used to PBS or LSF, this guide below might help you walk through some of the commands if you need to say create your own reference index or do tmap on the TS

Basics

https://ac.seas.harvard.edu/display/USERDOCS/How+To+Run+Parallel+MPI+Jobs+Using+SGE

Array jobs for clusters running SGE

http://wiki.gridengine.info/wiki/index.php/Simple-Job-Array-Howto

Converting between PBS and SGE scripts

http://wiki.ibest.uidaho.edu/index.php/Tutorials:_SGE_PBS_Converting
Above url has a fantastic conversion table that lists options that are new to me as well!
For a more concise, quick and dirty guide see here
http://www.ucl.ac.uk/isd/common/research-computing/services/legion-upgrade/userguide/pbstosge