Tuesday, 18 December 2012

Bowtie 2 2.0.4 released: Fixed issue whereby --un, --al, --un-conc and --al-conc options would incorrectly suppress SAM output.

---------- Forwarded message ----------
From: Langmead, Ben <blangmea@jhsph.edu>
Date: Tue, Dec 18, 2012 at 10:29 AM

Please make the switch from 2.0.3, as the first issue listed below is major.

Bowtie 2 version 2.0.4  - December 17, 2012
   * Fixed issue whereby --un, --al, --un-conc and --al-conc options would
     incorrectly suppress SAM output.
   * Fixed minor command-line parsing issue in wrapper script.
   * Fixed issue on Windows where wrapper script would fail to find
     bowtie2-align.exe binary.
   * Updated some of the index-building scripts and documentation.
   * Updated author's contact info in usage message.



Ben Langmead
Department of Computer Science
Johns Hopkins University
3400 North Charles St
Baltimore, MD 21218-2682


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