Some of these are new to me as well!
excerpt
GNomEx:
It is a a web accessible database and LIMS to organize and track the generation of raw genomic data and associated downstream analysis.
https://hci-as1.hci.utah.edu/gnomex/gnomex.html
It is a Genomic Annotation Publisher which stores information about each annotation in a database. http://bioserver.hci.utah.edu/BioInfo/index.php/Software:DAS2
The Integrated Genome Browser is an interactive, zoomable, scrollable software program you can use to visualize and explore genome-scale data sets, such as tiling array data, next-generation sequencing results, genome annotations, microarray designs, and the sequence itself.
http://www.bioviz.org/igb/
Galaxy allows you to do analyses without the need to install or download software. You can analyze multiple alignments, compare genomic annotations, profile metagenomic samples, etc.
http://main.g2.bx.psu.edu/
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