Recently Built colorspace index for hg19 (from ftp://ftp.sanger.ac.uk/pub/1000genomes/tk2/main_project_reference/)
AMD Phenom II X4 955 chip
8 GB RAM
SATA2 HDD
Wrote 822714402 bytes to primary EBWT file: hg19.rev.1.ebwt
Wrote 358098108 bytes to secondary EBWT file: hg19.rev.2.ebwt
Re-opening _in1 and _in2 as input streams
Returning from Ebwt constructor
Headers:
len: 2864784823
bwtLen: 2864784824
sz: 716196206
bwtSz: 716196206
lineRate: 6
linesPerSide: 1
offRate: 5
offMask: 0xffffffe0
isaRate: -1
isaMask: 0xffffffff
ftabChars: 10
eftabLen: 20
eftabSz: 80
ftabLen: 1048577
ftabSz: 4194308
offsLen: 89524526
offsSz: 358098104
isaLen: 0
isaSz: 0
lineSz: 64
sideSz: 64
sideBwtSz: 56
sideBwtLen: 224
numSidePairs: 6394609
numSides: 12789218
numLines: 12789218
ebwtTotLen: 818509952
ebwtTotSz: 818509952
Total time for backward call to driver() for mirror index: 01:24:19
Gosh and I thought it will take hours!
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