Tuesday, 3 April 2012

[Velvet-users] My "Velvet Advisor" web site to help beginners choose a k-value

A cool resource done by Torsten Seemann for a frequently asked question.
what k-value do I use?
Source: velvet mailing list


It's aimed at beginners who want some guidance with choosing "k" and don't feel comfortable yet thinking in terms of k-mers rather than bases.

It hasn't been tested thoroughly, so will break if you give it silly input, but I think the basics work.

Hope you find it helpful!

--Dr Torsten Seemann
--Scientific Director : Victorian Bioinformatics Consortium, Monash University, AUSTRALIA
Velvet-users mailing list

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