Should I remove duplicates in my NGS data?

interesting posts here about PCR duplicates in NGS data

links compiled by malachig

Redundant reads are removed from ChIP-seq, what about RNA-seq
Duplicate reads removal

Threshold for duplicate removal

Heavy read stacking on the solexa platform
Should identical reads be reduced to a single count?

Removing duplicate reads from multigig .csfasta

Source of duplicate reads and possible ways of reducing