we all have these days ... identify-indel-regions.pl - popoolation2 - Allows comparision of allele frequencies between two ore more populations - Google Project Hosting

http://code.google.com/p/popoolation2/source/browse/trunk/indel_filtering/identify-indel-regions.pl?r=147

my $nucs="";
    while(@ar)
    {
        my $cov=shift @ar;
        my $n=shift @ar;
        my $q=shift @ar;
        die "mpileup fucked" unless(defined($q));
        $nucs.=$n;
    }
    #


lol chanced on this trying to find out why I got signal 139 on mpileup segfaulted on me ...