Galaxy July 20, 2012 Distribution & News Brief

Galaxy July 20, 2012 Distribution & News Brief

Complete News Brief
http://wiki.g2.bx.psu.edu/DevNewsBriefs/2012_07_20

Highlights:
http://wiki.g2.bx.psu.edu/News/Jul202012%20Distribution%20News%20Brief

• Freebayes has moved from the Galaxy distribution to the Galaxy's Main Tool Shed

• EMBOSS version 5.0.0 tool dependencies in the emboss_5 repository of the Galaxy Main Tool Shed updated to include information for automatically installing.

• Tool Shed now also supports specifying the third party tool dependencies to be automatically installed in new repositories

• Admin Genome Indexing is now in BETA. Download, index, and track progress right from the admin UI!
  

• Improved Error Handling that captures EXIT codes, STDOUT, and STDERR from tools in XML. Be sure to read full details.

• TopHat2/Bowtie2 latest support includes option to 'report discordant pairs', updated tests, and more preset options.

• Trackster new parameter space visualization. Includes BRAND NEW Features!! More details coming soon, but give a test drive now.

http://getgalaxy.org

new:     % hg clone http://www.bx.psu.edu/hg/galaxy galaxy-dist  upgrade: % hg pull -u -r ec29ce8e27a1    

Thanks for using Galaxy!
We hope to see everyone in Chicago @ GCC2012!!

The Galaxy Team

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