[Velvet-users] Velvet 1.2.06 no need for interleaving of paired end reads

From: Daniel Zerbino
Date: 24 May 2012 10:18
Subject: [Velvet-users] Velvet 1.2.06



Dear Velvet users,

Torsten Seeman and David Powell from Monash University have been
cleaning up Velvet code, available as usual on github or
www.ebi.ac.uk/~zerbino/velvet/velvet_latest.tgz

They cleaned up the parsing code, added some unit tests, but especially
added a feature which many people have clamored for a long time: the
interleaving of paired-end files is no longer necessary. By default,
Velvet's behavior stays the same but with the '-separate' flag, you can
now provide pairs of files, as in:

velveth Assem 31 -shortPaired -fasta -separate left.fa right.fa

Many thanks to Torsten and David for their work,

Best regards,

Daniel
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