Monday, 18 November 2024

Connecting the Dots: Biology At Scale In The Age Of AI (Broad Institute)

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Collected the videos in a playlist  Connecting the Dots: Biology At Scale In The Age Of AI (Broad Institute) Nov 9, 2024 1,338 views • Nov 9...
Saturday, 16 November 2024

Meet Evo, the DNA-trained AI that creates genomes from scratch

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https://www.science.org/content/article/meet-evo-dna-trained-ai-creates-genomes-scratch ChatGPT, the famous artificial intelligence (AI) cha...
Tuesday, 5 October 2021

HGVS nomenclature

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 Was recently asked about HGVS nomenclature reporting. The fun thing about biology is that there's going to be exceptions to the rule or...
Tuesday, 28 September 2021

Reproducible, scalable, and shareable analysis pipelines with bioinformatics workflow managers | Nature Methods

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 Reproducible, scalable, and shareable analysis pipelines with bioinformatics workflow managers | Nature Methods    https://www.nature.com/a...
Monday, 27 September 2021

Orientation Bias artifect

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  strand bias and orientation bias – GATK (broadinstitute.org) " The read orientation artifact, also known as the orientation bias arti...
Friday, 17 September 2021

Benchmarking variants and comparing truth sets: List of useful tools and publications

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Just realised that other than vcf-compare and bedtools intersect  there's other options   https://github.com/RealTimeGenomics/rtg-tools...
Thursday, 15 July 2021

Running Kraken2 and creating a Krona report

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 Had to work with Ion Torrent BAMs for this but I think it's applicable to everything   Needed to run this on unmapped reads so running ...