tag:blogger.com,1999:blog-8959227089815463704.post8493496530053435470..comments2023-10-02T17:00:45.520+08:00Comments on Kevin's GATTACA World: snpEff crashed java.lang.Exception at ca.mcgill.mcb.pcingola.fileIterator.NeedlemanWunsch.(NeedlemanWunsch.java:23)Unknownnoreply@blogger.comBlogger1125tag:blogger.com,1999:blog-8959227089815463704.post-41985631113151456592011-11-10T00:03:57.037+08:002011-11-10T00:03:57.037+08:00Hmmm I have what I believe is truncated output so ...Hmmm I have what I believe is truncated output so I think the commandline is correct although I will try again with this <br />'java -Xmx4G -jar snpEff.jar eff -v -i vcf -o vcf GRCh37.63 1000G.exomes.vcf > snpEff_output.vcf' <br /><br />tomorrow .. <br /><br />the sequence that triggered the error also looks dubious .. hmmm hope the author replies soon ... updates to comeKevinhttps://www.blogger.com/profile/00419554940694709908noreply@blogger.com