tag:blogger.com,1999:blog-8959227089815463704.post2314438907888037108..comments2023-10-02T17:00:45.520+08:00Comments on Kevin's GATTACA World: RNA-seq of a 12GB dataset in less than 7 hoursUnknownnoreply@blogger.comBlogger4125tag:blogger.com,1999:blog-8959227089815463704.post-39583961425368980362011-03-22T23:32:54.671+08:002011-03-22T23:32:54.671+08:00RNA seq is slower when u have to consider spliced ...RNA seq is slower when u have to consider spliced transcripts ;)Kevinhttps://www.blogger.com/profile/00419554940694709908noreply@blogger.comtag:blogger.com,1999:blog-8959227089815463704.post-13993263522458453932011-03-20T12:40:09.299+08:002011-03-20T12:40:09.299+08:00I didn't do RNA seq (yet), but mapping 23 mill...I didn't do RNA seq (yet), but mapping 23 million sequences to human genome (Gg18) took about 2 hours on a single machine with dual 6-core 2.66 gHz xeons and 48GB RAMAnonymousnoreply@blogger.comtag:blogger.com,1999:blog-8959227089815463704.post-3732072138195745322011-03-13T02:31:05.405+08:002011-03-13T02:31:05.405+08:00Hmmm what do you mean by mapping faster by giving ...Hmmm what do you mean by mapping faster by giving random locations? <br />This is not a plug for CLCbio btw, :) I am curious about commercial products and their benchmarking. <br />Thus far, I do find CLCbio being rather open in the sense that by publishing benchmarks you are <br />1)very sure that your product is the best out there. <br />2)inviting others to benchmark and prove that you are not the best. <br /><br />which seems fair enoughKevinhttps://www.blogger.com/profile/00419554940694709908noreply@blogger.comtag:blogger.com,1999:blog-8959227089815463704.post-77565332838653434752011-03-13T02:14:20.899+08:002011-03-13T02:14:20.899+08:00Hows the sensitivity and specificity of the mappin...Hows the sensitivity and specificity of the mapping? I can map faster by giving random locations :)Anonymousnoreply@blogger.com